Data Access

 

The overarching goal of the BRAIN Initiative Cell Census Network (BICCN) project is to build comprehensive three-dimensional common reference brain cell atlases that will integrate molecular, anatomical, and functional data for describing cell types in mouse, human, and non-human primate brains. Like other NIH large-scale community resource projects, the BICCN project seeks broad and rapid data dissemination and use by the entire scientific community to accelerate scientific exploration and to reap the maximum value from this project. All data produced from mouse, non-human primate, and open-access consented human brain samples will be available for unrestricted access and use immediately upon release to public databases

 

Organism Grant Investigator Modality Method Technique Count Units Protocol Download
MouseU01 - DongHong-Wei Dongconnectivityretrograde tracingquadruple injection18brains

 BIL

connectivityretrograde tracingtriple injection5brains

U01 - OstenPavel Ostencell countingimagingSTPT107brains

 BIL

 BIL

 BIL

U19 - EckerHong-Wei DongconnectivityTRIOtriple injection; monosyntaptic transsynaptic10brains

 BIL

Bing RenepigenomicssnATAC-seqTn5 transposase336,000cells

 NeMO

Joseph EckerepigenomicssnmC-seqsnmC-seq226,538cells

 NeMO

Joseph Ecker / Edward Callawayepigenomics; connectivitysnmC-seq; retrograde tracingsnmC-seq2; AAVretro injection4,224cells

 NeMO

U19 - HuangAviv RegevtranscriptomicssnRNA-seq10x Chromium 3' v2 sequencing31,372cells

 NeMO

Evan MacoskotranscriptomicssnRNA-seq10x Chromium 3' v2 sequencing398,499cells

 NeMO

Hong-Wei Dongconnectivityanterograde tracingtriple injection9brains

 BIL

connectivityretrograde tracingquadruple injection1brains

 BIL

Josh Huangcell countingimagingSTPT27brains

 BIL

connectivityimagingSTPT22brains

 BIL

U19 - ZengHongkui Zengconnectivityretrograde tracingtranssynaptic98brains

 BIL

transcriptomicsscRNA-seq10x Chromium 3' v2 sequencing366,203cells

 NeMO

transcriptomicsscRNA-seqSMART-seq44,252cells

 NeMO

transcriptomicssnRNA-seq10x Chromium 3' v2 sequencing88,521cells

 NeMO

transcriptomicssnRNA-seqSMART-seq6,816cells

 NeMO

Hongkui Zeng / Qingming Luocell morphologyimagingfMOST3brains

 BIL

These data sets have been deposited at either the Brain Image Library (BIL) R24 data archive at the Pittsburgh Supercomputing Center or the Neuroscience Multi-Omic Archive (NeMO) R24 data archive at the University of Maryland. You can find instructions for methods of downloading these data sets at the following locations: